Population-scale peach genome analyses

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August undefined, 2024

WebJan 5, 2024 · Results: Here, we generate a high-quality de novo genome assembly for a flat-fruit peach cultivar and produce a comprehensive SV map for peach, as a high proportion … WebPopulation-scale peach genome analyses unravel selection patterns and biochemical basis underlying fruit flavor. Yu Y; Guan J; Xu Y; et al. See more; Nature Communications (2024) …

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WebJun 14, 2024 · DOI: 10.1038/s41467-021-23879-2 Corpus ID: 235438075; Population-scale peach genome analyses unravel selection patterns and biochemical basis underlying fruit … WebJun 14, 2024 · Population genomic analyses reveal a fascinating history of convergent selection for sweetness yet divergent ... Population-scale peach genome analyses … layering finra

Genome-wide SNP detection and genetic population inferences on …

WebJun 1, 2024 · We also map the resequencing data for 564 peach accessions to this LHSM assembly at an average depth of 26.34× per accession. Population genomic analyses … WebThe population structure in all the tested materials was analyzed according to the K value, and the population was divided into four categories , indicating some variation within the population. Phylogenetic analyses showed similar results ( Figure 1C ), indicating that these analyses can play a role in preventing false positives in GWASs ( Soto-Cerda and Cloutier, … WebPopulation-scale peach genome analyses unravel selection patterns and biochemical basis underlying fruit flavor. Yang Yu, Jiantao Guan, Yaoguang Xu, Fei Ren, Zhengquan Zhang, … layering fiberglass

The Peach v2.0 release: high-resolution linkage mapping ... - BMC …

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WebJan 28, 2024 · The carotenoid cleavage dioxygenase (CCD) gene family in plants comprises two subfamilies: CCD and 9-cis-epoxycarotenoid dioxygenase (NCED). Genes in the NCED subfamily are mainly involved in plant responses to abiotic stresses such as salt, low temperature, and drought. Members of the NCED subfamily are the most important rate … WebApr 14, 2024 · In interspecific hybrids, alignment of reads to both parental genomes simultaneously can generate haploid data, potentially eliminating the problem of heterozygosity. Two populations of interspecific hybrid rootstocks of walnut ( Juglans ) and pistachio ( Pistacia ) were genotyped using alignment to the maternal genome, paternal … katherine stewart attorney spoonerWebJun 14, 2024 · A narrow genetic basis in modern cultivars and strong linkage disequilibrium in peach (Prunus persica) has restricted resolution power for association studies in this … katherine stewart obituary

"Webdevelopment of advanced tools for genetic and genomic analyses. The first release of the peach genome (Peach v1.0) represented a high-quality WGS (Whole Genome Shotgun) … " - Population-scale peach genome analyses

Population-scale peach genome analyses

Development of a 775 SNP array for peach based on whole …

WebApr 12, 2024 · The D population showed a closer genetic relationship with the C population, compared with the AB populations. A comparative analysis of the genomes of different …

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WebSep 9, 2015 · IPSC 9K SNP array performance. We genotyped 1,580 Prunus accessions (1,576 P.persica plus four Prunus-related species) using the IPSC peach 9K SNP array v1 … WebOct 6, 2024 · Background Genome structural variations (SVs) have been associated with key traits in a wide range of agronomically important species; however, SV profiles of peach …

WebJan 5, 2024 · Genome structure variation analyses of peach reveal population dynamics and a 1.67 Mb causal inversion for fruit shape. ... It is simply the case that some functionally … WebJun 15, 2024 · Yu Y, Guan J, Xu Y et al, Population-scale peach genome analyses unravel selection patterns and biochemical basis underlying fruit flavor. Nature Communications …

WebJul 20, 2010 · Peach [Prunus persica (L.) Batsch] is one of the most economically important fruit crops that, due to its genetic and biological characteristics (small genome size, … WebApr 12, 2024 · Sequencing and variant discovery. GBS was performed on 338 tea accessions using Illumina HiSeq X ten. After the filtering step, 217 Gb clean data were generated with …

WebMar 9, 2024 · Rice has been established as an evolutionary and genomic model for ferality, laying the foundation for large-scale comparative work across species that could build theory and generalizable knowledge. Other emerging directions include the use of feral populations in breeding programs, reexamining domestication in light of the role of …

WebMay 23, 2024 · In this instance, such isolates are typically excluded from population genomic analyses as statistical methods are not well equipped to deal with this added complexity [10–12]. The first probabilistic model for identifying IBD between pairs of haploid genomes was introduced by Daniels et al. [ 9 ], who implemented a hidden Markov model … katherine stewart primarkWebGeorge Manganaris is currently Associate Professor in the Department of Agricultural Sciences, Biotechnology & Food Science at Cyprus University of Technology. He entered … layering financial crimeWebThis Book of Abstracts "Pre-breeding -fi shing in the gene pool" includes the summary for each of the invited keynotes, volunteer talks and posters presented at the EUCARPIA … layering fine hair with a razor combWebJan 27, 2024 · Using whole genome re-sequencing technology, a total of 1,022,354 SNPs was identified in 56 peach breeding accessions (Verde et al., 2012). Cao et al. (2016) … katherine stewart syracuseWebComparative syntenic analyses uncovered numerous, large-scale scaffolding errors present in each chromosome in the previously published version of the F. vesca genome. katherine stewart representative steve israelWebImmunoprecipitation analyses of the agroinfiltrated halos revealed that all AGOs, except AGO6, AGO7 and AGO10, associated with vd-sRNAs: AGO1, AGO2 and AGO3 preferentially … katherine st grovetown gaWebFeb 7, 2024 · As far as the genetic factor is concerned, a dominant allele for peach fungus gummosis resistance has been found in almond based on F 1 and BC 1 F 1 population. … layering fire definition